Difference between v1.2 and v1.2a.1?

[xiekunwhy]

Hi,

What are the differece between v1.2 (git clone from github source and compiled) and v1.2a.1( install using conda)?

I got differece results using these two version, it seem that v1.2 (git clone from github source and compiled) worse than v1.2a.1(install using conda), because v1.2 tend to generate wrong connection(scaffold_1).

Here is v1.2 (git clone from github source and compiled) result,

Here is v1.2a.1 (install using conda) result, this result is more close to our expected (I can not tell you what species is).

All parameters are the same when running these two versions.

Best, Kun