ggVennDiagram
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C stack usage 7972740 is too close to the limit
Hi,
I got following errors when using ggVennDiagram, do you known why?
library(ggplot2)
library(ggVennDiagram)
vdat <- read.table(infile, header = F, stringsAsFactors = F)
ids <- unique(vdat$V1)
df1 <- list()
for (id in ids) {
print(id)
df1[[id]] <- unique(vdat[vdat$V1 == id,][,2])
}
print(str(df1))
List of 5
$ KOG : chr [1:25551] "mikado.Hap1_chr1G1" "mikado.Hap1_chr1G2" "mikado.Hap1_chr1G3" "mikado.Hap1_chr1G4" ...
$ GO : chr [1:34959] "mikado.Hap1_chr1G1" "mikado.Hap1_chr1G10" "mikado.Hap1_chr1G100" "mikado.Hap1_chr1G1000" ...
$ NR : chr [1:41937] "mikado.Hap1_chr1G1" "mikado.Hap1_chr1G2" "mikado.Hap1_chr1G3" "mikado.Hap1_chr1G4" ...
$ SwissProt: chr [1:29362] "mikado.Hap1_chr1G1" "mikado.Hap1_chr1G2" "mikado.Hap1_chr1G3" "mikado.Hap1_chr1G4" ...
$ KEGG : chr [1:13215] "mikado.Hap1_chr1G100" "mikado.Hap1_chr1G1000" "mikado.Hap1_chr1G10000" "mikado.Hap1_chr1G10003" ...
NULL
ggVennDiagram(df1, label="count", label_alpha=0, edge_size=0.4)
Error: C stack usage 7972740 is too close to the limit
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted
Best, Kun