Contig was cutted continually

[xiekunwhy]

Hi,

I found that YaHS cut some contigs continually like following (utg261 in scaffold_28), why don't join these continually pieces or add an option to join them?

scaffold_28 1 22000 1 W utg261 13001 35000 + scaffold_28 22001 22200 2 N 200 scaffold yes proximity_ligation scaffold_28 22201 34200 3 W utg261 35001 47000 + scaffold_28 34201 34400 4 N 200 scaffold yes proximity_ligation scaffold_28 34401 454400 5 W utg261 47001 467000 + scaffold_28 454401 454600 6 N 200 scaffold yes proximity_ligation scaffold_28 454601 1549263 7 W utg413 9001 1103663 + scaffold_28 1549264 1549463 8 N 200 scaffold yes proximity_ligation scaffold_28 1549464 1849806 9 W utg6105 1 300343 - scaffold_28 1849807 1850006 10 N 200 scaffold yes proximity_ligation scaffold_28 1850007 1896624 11 W utg6020 378001 424618 - scaffold_28 1896625 1896824 12 N 200 scaffold yes proximity_ligation scaffold_28 1896825 2274824 13 W utg6020 1 378000 - scaffold_28 2274825 2275024 14 N 200 scaffold yes proximity_ligation scaffold_28 2275025 3467380 15 W utg675 1 1192356 + scaffold_28 3467381 3467580 16 N 200 scaffold yes proximity_ligation scaffold_28 3467581 3952820 17 W utg1310 1 485240 +

Best, Kun