sequenceserver

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Removes an unnecessary line introduced in #618.

dpavam

Hsp alignment download reformat

11

FASTA headers of the downloaded HSP alignments now show the hit number and hsp number (in letters) that the user is currently looking at.

iQuxLE

routes.rb posts to /#{job.id}; should post to REQUEST_URI/{#job.id}

14

https://github.com/wurmlab/sequenceserver/blob/c466156ca469d0f4d20ac21c46155f9d7b89e0ba/lib/sequenceserver/routes.rb#L101 We've had to hack this line in routes.rb to post to a custom URL because this posts to / , while our deployments serve sequenceserver under a proxied sub-url...

sammyjava

Ruby 3.1.2 update

6

With these updates SequenceServer is able to work on Ruby 3.1.2

iQuxLE

Are there reasons for/against: Bumping jQuery from 2.1.4 to 3.5 bumping clean-css from 3.4.28 to 4.1.11 bumping tester from 5.13 to 5.14.2 ?

yannickwurm

wrap list of databases if there are more than 200 characters

5

fixes #551

Lazy-poet

add previous and next buttons to navigate longer queries

2

This PR fixes #592

Lazy-poet

(similarly to the ruby-side tests)

yannickwurm

Sticky notification for mixed sequences

2

this fixes issue #500

Lazy-poet

Support filename with spaces

8

Doesn't work despite c466156ca469d0f4d20ac21c46155f9d7b89e0ba ```bash FASTA file to format: /passenger/yannick/sequenceserver/databases/query sadf copy.fa FASTA type: nucleotide Proceed? [y/n] (Default: y): y Enter a database title or will use 'query sadf copy':...

yeban