nullarbor
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tseemann
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
Let's say I have a singularity container with all of TorstyVerse installed: `torstyverse.simg`. I can, for example, call `mlst` by: `/path/to/img/torstyverse.simg mlst`. Could a `--singularity-image` option be added that points...
Could be useful to know if reference had a lot of homopolymer indels
The SNP density plot would be good to have * het snps * masked zones
This should get a ? instead of a X ``` 2014-12324 | efaecium | - | atpA(4) | ddl(8) | gdh(1) | purK(1) | gyd(1) | pstS(20) | adk(1) |...
Good afternoon, I do get roary results but I do not get any reports. I am at loss on what is happening here... any idea or help would be greatly...
``` space Delete most of the unnecessary big files panic In case of emergency only! More help: https://github.com/tseemann/nullarbor#nullarbor tseemann@trillian:nullarbor $ make space make: *** No rule to make target 'space'....