Taylor Salo

Continuing from https://github.com/ME-ICA/tedana/issues/679#issuecomment-782423984 (specifically # 2), I checked the pattern of flagged echoes in a 5-echo run I have on hand. Specifically, I used the mask-limited version of the adaptive...

If we want to report variance explained by PCA and ICA, we should also report variance explained by global signal (when used). We can write out a run-level TSV for...

I think we have either addressed or opened separate issues for each of the pain points brought up in this issue, so I'm going to close it.

Can you share the tree for your dataset?

That's good to hear. It appears that pybids has some requirements, even when validation is disabled.

I think it's worth at least improving the documentation a bit, so I'll keep this open until I've had a chance to update that.

Two problems: 1. ~~The PASL multi-PLD dataset has a separate M0 scan with a different resolution, which leads to MCFLIRT failing.~~ Fixed, but then the results have odd artifacts (see...

Is there anything in tedana that would use the full data? My first thought is that this would be a great feature, but should go in fmripost-tedana, along with the...

If running tedana with the censored volume mask and running it directly on the censored data would be equivalent, then I think we should put that step in a postprocessing...

What about implementing something like [Pham et al. (2023)](https://www.sciencedirect.com/science/article/pii/S1053811923001180), which uses ICA and classifies components that exhibit burst noise? That would basically integrate "censoring" (flagging high-motion volumes) and ICA-based denoising...