visium topic
List
visium repositories
Tangram
224
Stars
45
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Spatial alignment of single cell transcriptomic data.
st_pipeline
54
Stars
48
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ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
visium-clustergrammer2
28
Stars
4
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Spatial Transcriptomics Dashboard
spatialvi
40
Stars
12
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Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
HumanPilot
63
Stars
27
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Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
spatialLIBD
72
Stars
16
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Code for the spatialLIBD R/Bioconductor package and shiny app
CellScopes.jl
19
Stars
2
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A Julia package for single cell and spatial data analysis
sttkit
19
Stars
7
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Pipeline for SpatialTranscriptomics and 10X Visium data