ga4gh topic

List ga4gh repositories

cromwell

963
Stars
350
Forks
Watchers

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

benchmarking-tools

182
Stars
46
Forks
Watchers

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

funnel

117
Stars
31
Forks
Watchers

Funnel is a toolkit for distributed task execution via a simple, standard API.

ga4gh-server

96
Stars
93
Forks
Watchers

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

workflow-execution-service-schemas

82
Stars
38
Forks
Watchers

The WES API is a standard way to run and manage portable workflows.

phenopacket-schema

69
Stars
28
Forks
Watchers

Repository for the GA4GH phenopacket schema

tool-registry-service-schemas

30
Stars
18
Forks
Watchers

APIs for discovering genomics tools, their metadata and their containers

vrs-python

46
Stars
27
Forks
Watchers

GA4GH Variation Representation Python Implementation

specification

32
Stars
25
Forks
Watchers

GA4GH Beacon specification.

TESK

39
Stars
29
Forks
Watchers

GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes