short-reads topic

🍶 Genome assembly with short sequence reads

bcgsc

Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.

unipept

SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnit...

CMU-SAFARI

ClairS - a deep-learning method for long-read somatic small variant calling

HKU-BAL

Genotyping of segregating mobile elements insertions

clemgoub