sequence-alignment topic
vsearch
Versatile open-source tool for microbiome analysis
minigraph
Sequence-to-graph mapper and graph generator
sequenceserver
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
ksw2
Global alignment and alignment extension
Arioc
Arioc: GPU-accelerated DNA short-read alignment
kalign
A fast multiple sequence alignment program.
unimap
A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
BioAlignments.jl
Sequence alignment tools
biscuit
BISulfite-seq CUI Toolkit
orthologr
Genome wide orthology inference and dNdS estimation