sequence-alignment topic
awesome-sequencing-tech-papers
A collection of publications on comparison of high-throughput sequencing technologies.
edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
bistring
Bidirectionally transformed strings
biopython
Official git repository for Biopython (originally converted from CVS)
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
diamond
Accelerated BLAST compatible local sequence aligner.
bwa-mem2
The next version of bwa-mem