protein-sequences topic

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

biojava

A Python API for the RCSB Protein Data Bank (PDB)

williamgilpin

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

songlab-cal

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)

songlab-cal

Get protein embeddings from protein sequences

sacdallago

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

sbl-sdsc

LAMBDA – the Local Aligner for Massive Biological DatA

seqan

Multi-task and masked language model-based protein sequence embedding models.

tbepler

An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.

dosorio

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

pymodproject