Song Lab @ Cal

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

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Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)

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This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention

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Genomic Pre-trained Network

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songlab-cal

A library for the deconvolution of bulk cell samples using single-cell RNA expression data.

songlab-cal

Cross-protein transfer learning for variant effect prediction

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