peptide-identification topic
DeepNovo
Protein Identification with Deep Learning
peptide-prediction-list
Collects software dedicated to predicting specific properties of peptides
ms2pip
MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
psm_utils
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
denovopipeline
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
ursgal
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
pFind3
ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications