Computational Omics and Systems Biology Group

icon indicating a website link https://www.compomics.com/ icon indicating an email [email protected]

icon location The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

Results 11 repositories owned by Computational Omics and Systems Biology Group

peptide-shaker

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Interpretation of proteomics identification results

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searchgui

38
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Highly adaptable common interface for proteomics search and de novo engines

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meta-proteome-analyzer

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MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.

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compomics-utilities

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Open source Java library for computational proteomics

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DeepLC

52
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DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

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moFF

32
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A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file

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ms2pip

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MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

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ThermoRawFileParser

107
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Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

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psm_utils

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Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

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ThermoRawFileParserGUI

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Graphical user interface for the ThermoRawFileParser

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