pathogen topic
List
pathogen repositories
pathongs
123
Stars
90
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Pathogen NGS Documentary
PHAT
17
Stars
2
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Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
tiptoft
38
Stars
10
Forks
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Predict plasmids from uncorrected long read data
darkest-space
19
Stars
1
Forks
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Minimal colorscheme for vim.
assembly_improvement
53
Stars
21
Forks
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Improve the quality of a denovo assembly by scaffolding and gap filling
Bio-Tradis
20
Stars
29
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A set of tools to analyse the output from TraDIS analyses
gff3toembl
29
Stars
13
Forks
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Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
iva
52
Stars
18
Forks
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de novo virus assembler of Illumina paired reads
mlst_check
27
Stars
16
Forks
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Multilocus sequence typing by blast using the schemes from PubMLST
plasmidtron
29
Stars
8
Forks
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Assembling the cause of phenotypes and genotypes from NGS data