pathogen topic
List
pathogen repositories
Roary
297
Stars
189
Forks
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Rapid large-scale prokaryote pan genome analysis
snp-sites
227
Stars
49
Forks
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Finds SNP sites from a multi-FASTA alignment file
Artemis
227
Stars
74
Forks
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Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
circlator
219
Stars
56
Forks
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A tool to circularize genome assemblies
ariba
155
Stars
52
Forks
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Antimicrobial Resistance Identification By Assembly
assembly-stats
108
Stars
22
Forks
Watchers
Get assembly statistics from FASTA and FASTQ files
gubbins
155
Stars
50
Forks
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Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Fastaq
68
Stars
19
Forks
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Python3 scripts to manipulate FASTA and FASTQ files
pathogen-informatics-training
64
Stars
36
Forks
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