infectious-diseases topic
SORMAS-Project
SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.
COVID-19_Unified-Dataset
Unified COVID-19 Dataset
EpiModel
Mathematical Modeling of Infectious Disease Dynamics
Roary
Rapid large-scale prokaryote pan genome analysis
snp-sites
Finds SNP sites from a multi-FASTA alignment file
Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
circlator
A tool to circularize genome assemblies
ariba
Antimicrobial Resistance Identification By Assembly
Pathogen.jl
Simulation, visualization, and inference of individual level infectious disease models with Julia
simulation_virus_covid-19
Simulating epidemics using Python