diffusion-mri topic

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images....

dipy

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

nipreps

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

AthenaEPI

Preprocessing and reconstruction of diffusion MRI

PennLINC

Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

SlicerDMRI

The reference implementation for the Non Local Spatial and Angular Matching (NLSAM) denoising algorithm for diffusion MRI

samuelstjean

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

MIC-DKFZ

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

MICA-MNI

Please use the new version of LiFE: www.github.com/brain-life/encode

francopestilli

Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps

MASILab