ncbi topic

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...

pirovc

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

biocommons

PLSDB pipeline to collect bacterial plasmids from NCBI

CCB-SB

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory...

maximilianh

Turbocharge a PubMed literature rather than clicking and clicking and clicking on Google Scholar

dvklopfenstein

This python script detects known traits in raw human genetic data.

MichaelSebero

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

Eslam-Samir-Ragab

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

VascoElbrecht

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

datasnakes

PipeTaxon exposes the ncbi taxonomy database as a REST API.

voorloopnul