microbiota topic

Python package to study microbial communities using metabolic modeling.

micom-dev

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

microsud

R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

david-barnett

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

ycl6

Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL

mibwurrepo

Make Picrust2 Output Analysis and Visualization Easier

cafferychen777