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Simple tooling for instance segmentation aiming at cell biology...

Kaggle: Image Segmentation

CI complete testing Code formatting codecov pre-commit.ci status

install this tooling

A simple way how to use this basic functions:

! pip install https://github.com/Borda/kaggle_image-segm/archive/refs/heads/main.zip

Kaggle: Tract Image Segmentation

The goal of this challenge is to segment organs in medical scans to improve cancer treatment

Sample organs visual

run notebooks in Kaggle

local notebooks

  • Tract segmentation with pure statistic
  • Tract segmentation: EDA, baseline with Flash & DeepLab-v3

some results

Training progress with ResNext50 with training for 20 epochs > over 0.80 validation IoU:

Training process

Kaggle: Cell Instance Segmentation

The goal of this challenge is to detect cells in microscope images.

Sample cells visual

run notebooks in Kaggle