Bioinformatics topic

Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.

List Bioinformatics repositories

pdb-tools

366
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112
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A dependency-free cross-platform swiss army knife for PDB files.

bioSyntax

248
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30
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Syntax highlighting for computational biology

awesome-single-cell

2.9k
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929
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Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

PostGUI

429
Stars
51
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A React web application to query and share any PostgreSQL database.

abyss

300
Stars
100
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:microscope: Assemble large genomes using short reads

raxml-ng

363
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62
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RAxML Next Generation: faster, easier-to-use and more flexible

nextflow

2.6k
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595
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A DSL for data-driven computational pipelines

galaxy

1.3k
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966
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Data intensive science for everyone.

SURVIVOR

333
Stars
45
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Toolset for SV simulation, comparison and filtering

AllenSDK

328
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148
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code for reading and processing Allen Institute for Brain Science data