maximum-likelihood topic
raxml-ng
RAxML Next Generation: faster, easier-to-use and more flexible
lifelines
Survival analysis in Python
relion
Image-processing software for cryo-electron microscopy
IQ-TREE
Efficient phylogenomic software by maximum likelihood
cmdstanr
CmdStanR: the R interface to CmdStan
cogent3
Comparative Genomics Toolkit 3
pastml
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
get_phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
gauss-naive-bayes
Gauss Naive Bayes in Python From Scratch.
gravity
R package that provides estimation methods for Gravity Models