Suzanne Jin
Suzanne Jin
Thanks a lot Thom!!! The values are the same for both propr versions when using expr+1. Now, I still have one question. The problem I have is that I am...
Hey Thom, sorry for the late response! I don't think the problem is between R 3.6 and R 4.0 since I have already tried on both R 3.5 and R...
Hey @AlSzmigiel what is the problem for you exactly? Do you find differences between different propr versions, or between different R versions?
@HelloWorldLTY @SilasK Have you managed to do that?
Hi @jolespin There is actually an nature issue about this : https://doi.org/10.1038/s41592-020-01006-1
hello! I also run into this problem and got solved by setting `--features_name_col gene_id` since my input data only has gene_id column but not gene_name. (see https://nfcore.slack.com/archives/C045UNCS5R9/p1721918979101339). This is a...
Hello @audrey-bollas , sorry for coming back to you so late. I believe that at least in the current version, select does not do more than just filtering columns before...
I also got the same error when I updated the build number, but for linux: https://dev.azure.com/conda-forge/feedstock-builds/_build/results?buildId=1091452&view=logs&j=d0d954b5-f111-5dc4-4d76-03b6c9d0cf7e&t=6d4b912b-175d-51da-0fd9-4d30fe1eb4e7
> Have you also considered omnipathdb? It contains a wide range of databases including PROGENy, collecTRI, GO, CytoSig (see also [#367](https://github.com/nf-core/differentialabundance/issues/367)) and can be queried using R, Python or a...
- [x] just finished adding the updated local modules `propr/propr` `propr/propd` and `propr/grea`