Simon Heumos

Results 86 comments of Simon Heumos

I have a similar problem with today's master, rust 1.51.0 and Archlinux: ``` gfaestus cerevisiae.pan.fa.aed9ce4.34ee7b1.891e76b.smooth.gfa cerevisiae.pan.fa.aed9ce4.34ee7b1.891e76b.smooth.og.lay.tsv loading GFA loading GFA with 636434 nodes, 878055 edges adding nodes adding edges adding...

Got it. Now it works for me, thank you very much @chfi !

If I understand you correctly, then you are trying to bind the `SetX` method of class `Geom_CartesianPoint`. First of all, I would recommend that you split your class into `description...

Hi, I think with `nbind` you can not bind header files. What you can bind is `classes` or `functions`, etc. However, in the example above you should make sure that...

@ISNIT0 Would it make sense to integrate your solution as an optional fix into the tutorial? So I would enhance it ;)

In the current release, there is no `odgi subset`. Which version are you using @userzxyz ? I would recommend to build the latest one from master https://odgi.readthedocs.io/en/latest/rst/installation.html#building-from-source.

You can find a tutorial of `odgi extract` at https://odgi.readthedocs.io/en/latest/rst/tutorials/extract_selected_loci.html.

+1 It would be really nice, if you could take a look at this. I am curious about using `minigraph` with maize genomes, too.

As the pangenome workflow is the only target workflow, I would vote to design this module for it. I would suggest to also add optional outputs for the consensus graphs...

Recurse does not work, because we also emit the optional MAF output in the tests which is not declared as input for the module. So we would have to recurse...