Simon Heumos
Simon Heumos
Hi @ewels! I don't know why, but the problem only arose with v1.12. I just used v1.13 and got the desired result :)
I am as confused as you!
It seems for now it is not so imminent. We will open it again, if things become serious ;) Thanks for coming back!
Hi Michal, how do you imagine this? JBrowse is an interactive visualization tool which comes with its own code data base. So far, I integrated all the 1D and 2D...
I had a quick look at the JBrowse way. My concern here is that it directly takes the PAF files as input. So *just* the pairwise alignments without taking the...
But, this would be the first tool to actually take a look at the initial alignments. For quality control and other things. Very important I just realized.
The first step here would be to bring all required software tools to bioconda @mictadlo. Then I can add a module for each tool and integrate them into the pipeline....
@yangao07 Are there any updates here? We observe the same problem when running local abPOA in pggb.
@glennhickey Taking a look at your architecture, it does not support SSE 4.1 if I see that correctly? https://en.wikichip.org/wiki/intel/xeon_e5/e5-2686_v4#Features
:sauropod: ! How soonish @pjotrp ? I woud like to use the new `vcfwave` via a Bioconda package, but the current version does not come with it.