Simon Heumos
Simon Heumos
Assuming this is solved. Else please re-open.
I can't before next week. Will do.
What if I don't have a samplesheet as input? As in https://github.com/nf-core/pangenome.
I have a simple FASTA.gz as input. Should be easily doable, if I understand correctly.
It is still unclear to me, that images generated on demand should not harm reproducibility.
Was this ever evaluated?
This will also increase the used CPU hours, right? Also, it feels a bit like Seqera will have a monopoly of containers. I am aware that Seqera did an awesome...
An `.fai` would be sufficient here! If I have the workflow correctly in my mind, we ensure we have one at any time. This sounds like a smart way forward...
Converting a GFA to rGFA one does need to specify at least one path as the reference path. The python script you linked to does not work this way. Maybe...
Just follow the usage line. I never used VRPG, so I can't really help you I guess. In my mind, you can go rGFA -> GFA, but vice-versa I don't...