Simon Heumos
Simon Heumos
https://github.com/pangenome/smoothxg/releases/tag/v0.6.7 new version incoming!
> I don't know if there are any other solutions @heuermh? Edge cases are always a huge pain in Nextflow. I would vote to just stay in `bash` for this...
Alright @heuermh. There are 3 ways forward: 1. We ignore the nf-core rules and just blindly copy the bash script from PGGB. 2. We write 2 modules. The first one...
Yes, I meant the bash loop from earlier. Hopefully option 3 will fly in next week. Else we can just push forward with option 1 and correct later.
Alright @heuermh. I sank quite some time into option 3 https://github.com/pangenome/smoothxg/tree/iter, but the way forward does not seem trivial. @AndreaGuarracino and I will take a closer look when we get...
Hmm. Maybe just letters will do. OR I can add all existing biological alphabets: DNA, RNA, amino acids, anything else? And we have an additional "OTHER" count, which counts all...
Maybe related to #1645?
https://fex.belwue.de/fop/AmgHJhzv/multiqc.log. Here the log file. Looks good to me. I can't see any obvious problems. Thanks for making this high priority!
Any updates @ewels ?