sourmash
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sourmash-bio
Quickly search, compare, and analyze genomic and metagenomic data sets.
as we explore the min-set-cov analysis, we're coming up with some interesting viz, e.g. #1225, and adding new output fields #1219. I think Appendix A, [How sourmash gather works](https://sourmash.readthedocs.io/en/latest/classifying-signatures.html#appendix-a-how-sourmash-gather-works), could...
would it be possible to combine size, scaled, and track-abundance info to calculate complexity of a signature in some way? I think what I want to know is the approx...
This issue can serve as a placeholder for use cases for sourmash/MinHash more generally. Stuff we already have implemented: * basic MinHash comparisons etc * metagenome taxonomy breakdown * streaming...
provide a way to calculate differences in taxonomic classification for samples. ref #367
https://twitter.com/thesteinegger/status/1554110032178028549 https://blog.cloudflare.com/introducing-r2-object-storage/ no egress fees!
documentation updates needed: we now have a lot of good evidence that f_match correlates with the fraction of genome that will be covered by mapped reads, per the [sourmash gather/minimum...
see https://github.com/sourmash-bio/sourmash/issues/2168 - a few ideas: * remove `-n` completely, 'cause it's a bit silly; * increase `-n` to be something larger than three; * adjust docstring for `-n` to...
This is a list of repositories for sourmash, software for rapidly searching and analyzing genomes and metagenomes! The main repository - [sourmash-bio/sourmash](https://github.com/sourmash-bio/sourmash/) - please file all questions and issues here!...
ref https://github.com/sourmash-bio/sourmash/issues/1959
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Quickly search, compare, and analyze genomic and metagenomic data sets.