sourmash

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Bumps [fixedbitset](https://github.com/petgraph/fixedbitset) from 0.4.2 to 0.5.7. Release notes Sourced from fixedbitset's releases. v0.5.7 Optimized the Clone::clone_from implementation to avoid allocations and redundant copies. v0.5.6 Fixed FixedBitset not implementing Send/Sync due...

dependabot[bot]

mac os wheel builds are failing in latest

1

maybe because github updated mac os image https://github.com/actions/runner-images/pull/9726

ctb

maturin build is failing on latest for maturin wheels, arch `ppc64le`

2

some really strange errors on the maturin wheels CI - ``` The following warnings were emitted during compilation: warning: [email protected]: liblz4/lib/lz4.c:222:11: fatal error: 'stdlib.h' file not found warning: [email protected]: 222...

ctb

ctb

doco: GTDB R207 database inconsistency

3

Hi there, I've been having some trouble getting R207 databases to work with `soumash tax metagenome`. I'm using 4.8.8 from conda. After running sketch, the instructions at https://sourmash.readthedocs.io/en/latest/tutorial-lemonade.html#id7 say ```...

wwood

update authorship for zenodo integration?

1

For latest release, [4.8.8](https://zenodo.org/records/10951577), authorship is listed as Brown, C. Titus, Irber Junior, Luiz Carlos

bluegenes

I don't think it does. It probably should. Related issues: * https://github.com/sourmash-bio/sourmash/issues/3008 * https://github.com/sourmash-bio/sourmash/issues/3071

ctb

see https://github.com/spack/spack/pull/40062, which has been stalled for a while

ctb

release checklist only says to check bioconda/`sourmash` package, but might as well also check conda-forge/`sourmash-minimal`.

ctb

@ccbaumler was running into this in a script, and it took us a bit to figure out why `Index.select(ksize="21")` was yielding 0 sketches :). (It wasn't as obvious in the...

ctb