sourmash

sourmash copied to clipboard

Bump wasm-bindgen-test from 0.3.31 to 0.3.32

1

Bumps [wasm-bindgen-test](https://github.com/rustwasm/wasm-bindgen) from 0.3.31 to 0.3.32. Commits See full diff in compare view [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) You can trigger a rebase of this PR by commenting `@dependabot rebase`. [//]: #...

dependabot[bot]

Bump web-sys from 0.3.58 to 0.3.59

1

Bumps [web-sys](https://github.com/rustwasm/wasm-bindgen) from 0.3.58 to 0.3.59. Commits See full diff in compare view [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) You can trigger a rebase of this PR by commenting `@dependabot rebase`. [//]: #...

dependabot[bot]

Bump wasm-bindgen from 0.2.81 to 0.2.82

1

Bumps [wasm-bindgen](https://github.com/rustwasm/wasm-bindgen) from 0.2.81 to 0.2.82. Changelog Sourced from wasm-bindgen's changelog. wasm-bindgen Change Log Commits 59883ea Bump to 0.2.82 (#3002) a8e934d Added inspectable generation to .d.ts file (#3000) (#3001) 1790a28...

dependabot[bot]

Bump az from 1.2.0 to 1.2.1

1

Bumps [az](https://gitlab.com/tspiteri/az) from 1.2.0 to 1.2.1. Changelog Sourced from az's changelog. Version 1.2.1 (2022-07-25) Fix build issue using rustc 1.64.0-nightly under Windows. Commits defb12c version 1.2.1 06b0747 tolerate remove_dir_all failure...

dependabot[bot]

[EXP] Use the bias factor for containment when estimating ANI

1

bluegenes

[WIP] Loading revindex from zipstorage

1

Very early manifest support in Rust

luizirber

in https://github.com/sourmash-bio/sourmash/pull/2147, I disabled napoleon because it was breaking with Sphinx 5.10. Do we need it / are we using it? If so we should revisit. per docs, >Napoleon is...

ctb

In https://github.com/sourmash-bio/sourmash/issues/1771, I found a nice benchmark that helped showcase some ~simple performance problems with `gather` and `prefetch`, since fixed in https://github.com/sourmash-bio/sourmash/pull/2123 and https://github.com/sourmash-bio/sourmash/pull/2132. For the moment, the dominant performance...

ctb

https://github.com/sourmash-bio/sourmash/pull/2005 adds ANI thresholding to `tax genome`, and for sourmash v5 we should make this the default.

ctb

update docs with more about ANI

1

(this can be a bit of a running issue until we get around to fixing them ;) The introduction of ANI output in [v4.4.0](https://github.com/sourmash-bio/sourmash/releases/tag/v4.4.0) is pretty awesome, with lots of...

ctb