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Uniclust90 sequence database

Open yusufzaferaydin opened this issue 3 years ago • 0 comments

:exclamation: Make to check out our User Guide.

Expected Behavior

I am trying to run HHblits using Uniclust90 as the sequence database.

Current Behavior

I am getting some errors. I downloaded the Uniclust90 database from this link

http://wwwuser.gwdg.de/~compbiol/uniclust/2018_08/uniclust90_2018_08.tar.gz

When I extract the contents I do not get files in this format

_cs219.ffdata packed file with column-state sequences for prefiltering _cs219.ffindex index file for packed column-state sequence file _a3m.ffdata packed file with MSAs in A3M format _a3m.ffindex index file for packed A3M file _hhm.ffdata packed file with HHM-formatted HMMs _hhm.ffindex index file for packed HHM file

Is it possible to have the six Uniclust90 database files so that we can build HMM-profiles for our targets?

Steps to Reproduce (for bugs)

HH-suite Output (for bugs)

when I run HHblits I get errors saying that some database files are not found

Context

Your Environment

I used Linux Ubuntu on a workstation with 128 GB RAM and 28 CPU cores (set the number of threads to 28 as well). I used the latest version of HHblits (downloaded and installed from GitHub).

yusufzaferaydin avatar Aug 23 '20 11:08 yusufzaferaydin