Wei Shen
Wei Shen
taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
kmcp
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
bwt
Burrows-Wheeler Transform and FM-index in golang
gtaxon
gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API server for both local and remote server.
gtdb-taxdump
GTDB taxonomy taxdump files with trackable TaxIds
taxid-changelog
NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
unikmer
a versatile toolkit for k-mers with taxonomic information