Wei Shen

Inverse Bloom Filter: wrong result after ReadFrom gzipped i/o stream

1

Hi, Thanks for writing this useful package, I like it very much. However when I found a problem as the title said when using `InverseBloomFilter`. I edited the test code...

Supporting undo renames

2

1. Saving renaming details of the **LAST** successful operation into current path, like `.brename_detail.txt`. 1. We may not use `\t` as the delimiter cause it's legal in path name, `_shenwei356-brename_`...

For example , I'd like to find broken files in a HDD.

Add an optional flag for resolving symlinks. Ref: http://stackoverflow.com/questions/18062026/resolve-symlinks-in-go

Change expression evaluation package

5

Since https://github.com/Knetic/govaluate is not active anymore, I plan to replace it with https://github.com/antonmedv/expr. Related commands: `filter2`, `mutate2`. It looks great! https://github.com/antonmedv/expr/blob/master/docs/Language-Definition.md

- [ ] add a new version of `easy_qsub` as `easy_qsub2`, adopting replacement strings in [rush](https://github.com/shenwei356/rush)

Added a faster Go version using [bio](https://github.com/shenwei356/bio) lib. It's compiled with [go 1.17](https://golang.org/dl/) Benchmark (CPU: AMD Ryzen 7 2700X Eight-Core Processor, 3.7 GHz) |app |gzip |plain| |:---------------|:-----|:----| |fqcnt_needletail|5.924 |0.733| |fqcnt_c1_kseq...

support windows color via mattn/go-colorable

3

Excited to say that go-logging supports windows color now! Thanks the contribution of @mattn for https://github.com/mattn/go-colorable A screenshot from https://github.com/shenwei356/brename/pull/1)  Cheers!

multithreads error in `sourmash sketch` - from numpy!?

3

I'd like to compute and index MinHash sketches on GTDB r202 representive genomes. The sketching step (v4.2.1) is parallelized with 16 or 40 threads on a 160-cores machine. But some...