seqan

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VCF files should write out the ID of a contig, not the contig itself. This PR fixes this.

SGSSGene

Release 2.5

1

# Checklist ## Preparation https://github.com/seqan/seqan/pull/2470 * [x] Freeze master/develop * [x] Bump develop version to 2.5.0 * [x] Make sure that app versions are greater than the last packages on...

smehringer

Build failure on Visual Studio 2019

15

I am getting the following error while compiling [***SeqAn***][1] Framework under Windows 10 using Visual Studio 2019. Click to open log ``` 1> [CMake] CMake Error: 1> [CMake] Running 1>...

mns-csharp

The workaround works, but it has quite some code smell to it.

eseiler

arm64, alignment problem causes a failure to build from source

3

https://github.com/seqan/seqan/blob/master/include/seqan/misc/bit_twiddling.h#L348 Steve McIntyre at https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=917851 writes: Hi! I've been doing a full rebuild of the Debian archive, building all source packages targeting armel and armhf using arm64 hardware. We are...

mr-c

Reading sequence records in chunks

6

Hi, I am using SeqAn 2.3.2. I am following sequence I/O tutorial. The steps mentioned to read records in chunks is not very much clear. For example, I have a...

mhassankhan90

Mason2 methylation simulation

13

Hi, I wanted to simulate some methylation treated reads, but all the reads are starting between position 1 and 10 of the reference genome. Any suggestions? Thanks Fritz

fritzsedlazeck

Hey! I needed to modify huge amounts of TSV files and as SeqAn is the one and only library to do this efficiently I wanted to contribute some code 😊

weese

homebrew/science is been deprecated - manual on Seqan website still advises install with brew install homebrew/science/seqan

4

Is it possible still to install seqan with homebrew? @rrahn It seems that homebrew/science is been deprecated, and that seqan (the library) migrated to homebrew core and that seqan-apps disappeared....

aleighbrown

MyersBitVector (Banded) returns wrong Score in some cases.

4

The issue only seems to occure when length(reference) == length(pattern) ```c++ #include #include #include #include #include #include #include using namespace seqan; using namespace std; template inline bool verification(TString & text,...

svnbgnk