seqan
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seqan
SeqAn's official repository.
One can create `String` which does not make sense, because short cant be packed. Doing this not only increases overhead, but does not work, i.e. the tests fail in some...
See http://gatkforums.broadinstitute.org/discussion/1204/what-input-files-does-the-gatk-accept-require for the format description.
Hi, Is it possible to access S3 hosted BAM files with `seqan::BamFileIn`? Htslib permits it but I couldn't find any documentation describing it here. Thanks!
Since our supporting platforms and packages are expanding, I would like to automate release process a bit so that everybody can do this job without any difficulties. Simply it will...
especially for MemoryMapping: https://www.kernel.org/doc/Documentation/vm/hugetlbpage.txt http://lxr.free-electrons.com/source/tools/testing/selftests/vm/map_hugetlb.c (needs changes by administrator) http://man7.org/linux/man-pages/man2/mmap.2.html https://www.freebsd.org/cgi/man.cgi?sektion=2&query=mmap
Function multi-versioning is the shit: https://lwn.net/Articles/691932/ I am trying to use it in Lambda, and I think we should consider activating it for the library so that apps always build...
I would like to read a fastq.gz file and monitor read progression in percent %. I think we should use zlib gzreadoffset to know the position block in the compressed...
:sob: https://buildd.debian.org/status/package.php?p=seqan2&suite=experimental - [x] test_align_parallel_data_structures [ppc64el] - [x] test_demo_tutorial_file_io_overview_solution3 [ppc64el, arm64, s390x, powerpc, ppc64] - [x] test_demo_tutorial_sam_and_bam_io_example7 [ppc64el, arm64, s390x, powerpc, ppc64] - [x] test_translation [alpha] - [x] test_index_bifm [alpha]...
Hi, I have BAM data in memory (bamHeader + bamRecords). Is it possible to create a BAI index file from this directly? I have found the function bool buildIndex(BamIndex &...
