spatialdata

spatialdata copied to clipboard

**Recommendation: attach a minimal working example** Minimal working example with a toy dataset: ``` from spatialdata.models import PointsModel n_points=10000 coords = pd.DataFrame({'x': np.random.rand(n_points), 'y': np.random.rand(n_points)}) points = PointsModel.parse(coords) points_sdata =...

ziyuanzhao2000

Add User Guide

1

Scverse X owkin hackathon SpatialData documentation [issue link](https://github.com/scverse/202503_hackathon_owkin/issues/22) Contributers : @lopollar @bisho2122 @Fritze

Bisho2122

@lopollar Ideas: - [ ] Allow for making a polygon query where the polygon is inside the `SpatialData` object, without the need to extract it and transform it. This is...

LucaMarconato

spatialdata._io: test remote tables support and fix repr

1

Fixes remote table support and fixes the repr for remote paths

ap--

Cloud fix remote embl datasets

1

Run remote tests against real remote datasets.

ap--

spatialdata.io.io_points: fix support for remote points

1

This PR adds remote filesystem support for points.

ap--

spatialdata.io.io_shapes: fix support for remote shapes

1

This PR adds remote filesystem support for shapes.

ap--

Add support for remote datasets

4

This is the PR to close https://github.com/scverse/spatialdata/issues/441.

berombau

Memory leak in bounding_box_query?

1

I am working with a spatialdata object with 49 visium samples: sdata ``` SpatialData object, with associated Zarr store: /cfs//02_nfcore_spatialvi/output/aggregation/data/merged_sdata.zarr ├── Images │ ├── 'study1_sample1_hires_image': DataArray[cyx] (3, 2000, 2000) │...

grst

prevent crashing tests on 3.10

1

Should fix crashing python3.10 tests

ap--