Roary
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sanger-pathogens
Rapid large-scale prokaryote pan genome analysis
Hello, I have trouble working with roary tool. I use prokka on Galaxy to annotate my genomes in .gff format (version 3) and then I use Roary (on Galaxy) with...
Hi I am trying to use roary_plots.py to visualize my phylogenetic tree, so I run the command following, however, there is an error saying: No module named 'matplotlib' . Does...
Hi, To render more conterable roary and the scripts associated, it is possible to add an option of "output directory" or "output path" to choose where saves the files produces...
Hello， Can I apply this soft to deal the eukaryote ？
I was under the impression I had installed all necessary dependencies and whatnot but roary persists in refusing to run, always with the same output. As I am new to...
Greetings, Doing a pangenome analysis, I've encounter the question multiple times as to why we need to do a full de novo assembly if there is a reference genome present...
Greetings, my question is rather quick. I simply want to know how the FastTree command is constructed in order to give the fastest alignment possible using this program. Looking to...
From Rosemarie.Sadsad [...] health.nsw.gov.au on CPAN. Hi, I am running Bio-Roary v3.7.0 as part of the Nullarbor pipeline, however the accessory_binary_genes.fa produced is empty. 0 Dec 8 22:56 accessory_binary_genes.fa 0...
Hello sanger-pathogens team, I installed roary from the repository (ubuntu 18.04) and performed the test using `dzil test`. However, it seems some tests failed and I don't know what to...
Hi, Can I get the file pan_genome_reference.fa with the command roary *.gff without other options? I didn't get pan_penome_reference.fa file with the command roary *.gff. I indeed got the pan_genome_reference.fa...
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Rapid large-scale prokaryote pan genome analysis