Robert Vaser

Hi, those are SAM-like tags which denote the following: LN - sequence length RC - number of reads used for polishing the sequence XC - percentage of polished windows in...

Hi, 'f' means that the number that follows is a float. It is the standard SAM tag in form `TAG:TYPE:VALUE`, you can see more [here](https://samtools.github.io/hts-specs/SAMtags.pdf). Best regards, Robert

Hi Dario, in error-correction Racon uses **all** found overlaps/alignments. I suspect that due to repetitive regions the memory just explodes as many reads have too many overlaps. Not sure what...

I guess it should help. You could also filter the paf file by allowing only N longest overlaps per read (e.g. 25?). Unfortunately, those filters need to be done outside...

Hi, could it be that it is hitting swap due to memory shortage? How large are the datasets you recreated this issue? In some lower versions there was an overflow...

Would you maybe be willing to share one of your datasets that behave as described above? It would make it easier for me to solve this issue.

It would be the best if I get all files you were using (reads, overlaps, contigs) and the exact command. Share with google drive/dropbox and send the link via mail?

Hello, I am adding the authors of that part of code to take a look at this. @tijyojwad, @vellamike, could you please have a look? Best regards, Robert

@Kirk3gaard, if you mean a note about the new repository, it can be found in the about section. If something else, please elaborate.

Hi Lucia, not sure what is causing the problem, can you try v1.4.20 from bioconda? Is there a chance for you to share your data? Best regards, Robert