Robert Vaser
Robert Vaser
Or you can let it run, be sneaky and copy the intermediate files while it polishes with Illumina data :)
Hi Julien, as I thought you have unusual amount of Illumina data. You can of course run ra with PB only data. Later if you want to you can subsample...
Racon is run twice with TGS data, and once with NGS data. The NGS polishing is the part you will do manually due to memory shortage, i.e. polish the outputted...
Hi Christopher, have you checked that the identifiers are all different? You can send me the data via mail if you don't mind so I can investigate locally. Best regards,...
Hi, can you please run `g++ --version` (or `clang ++ --version`)? Best regards, Robert
Please run `make VERBOSE=1` and paste the output here.
Hmm, can you try and update your compiler?
Hello, can you please paste here the commands you run for compilation and execution? Also, can you please check in `ra_work_directory_/` the size of the .paf file? Best regards, Robert
Did you run cmake with Releade flag? Still, the majority of execution time will be lost on 5T paf parsing :/
Well, the current version of ra parses the overlap file several times, which will take quite long for large files. We are working on a workaround.