Robert Vaser

Hello Brian, can you please run `head -n 20 ../../scripts/ra/build/bin/ra` and paste the output here? Best regards, Robert

Hi Brian, ra prints the assembly (constructed contigs) to stdout (i.e. you should have run it with `python /home/brian/scripts/ra/build/bin/ra -t 32 -x pb pacbio_all.fasta > ra_assembly.fasta`). File `rala_assembly_graph.gfa` is output...

Hi, there was a missing header in one of the submodule files (newer compilers report this error). I hopefully fixed it and pushed the new version to master. Best regards,...

Hello, I have started Ra on Escherichia, Saccharomyces and Drosophila and will report them once they finish (I don't have the human dataset downloaded), but I can also give you...

@chklopp, here are the results you requested: | Dataset | Size (GB) | Coverage | Technology | CPU time (s) | Memory (GB) | Disk space (GB) | | -...

Hello, this repository is not maintained anymore, you can check the successor at https://github.com/lbcb-sci/raven. If you really want the GFA output of Rala, you can add `graph->print_gfa("rala.gfa");` at https://github.com/rvaser/rala/blob/master/src/main.cpp#L91 and...

Hello Richard, Spoa is a vectorized (SIMD) multiple sequence alignment (MSA) tool with quadratic complexity, hence will need a lot of memory for long sequences. What exactly is your use...

Hello, your compiler is outdated, please update it. Or if you have a newer version installed but it is not picked up, add it by running: `cmake -DCMAKE_C_COMPILER= -DCMAKE_CXX_COMPILER= -DCMAKE_BUILD_TYPE=Release...

Latest commit (v4.0.8) uses FetchContent and find_package, can you try it? Edit: Cereal is optional from 4.0.8, so you need to use -Dspoa_use_cereal=ON to build with.

No idea at this point :D