Robert Vaser

@elenasantidrian, racon `1.2.0` has a wrapper script to enable easier correction for large files (you can split target sequences to decrease memory consumption). Also, all racon versions beyond `1.0.0` should...

Hello, only the best mapping per read, in the mappings file passed to Racon, is kept for consensus. If you would manually split the mappings file into smaller chunks, i.e....

You run your input of 250GB on a 500GB RAM machine and the program crashed due to memory shortage? I would advise you to use the whole coverage for best...

I hardly believe that a large input as this will fit into 500GB RAM. Did you try and split the reads and the mappings by unitigs? Best regards, Robert

Hello, I am not sure what Ivan meant with it, you should just combine the outputs of each run. Best regards, Robert

@aviantask @ebioman, racon `1.2.0` has a wrapper script to enable easier correction for large files (you can split target sequences to decrease memory consumption). Also, all racon versions beyond `1.0.0`...

Hello Pedro, sorry for the delayed response. You should definitely try replacing read identifiers with integers as it will save a lot of memory. Just a sanity check, your 749GB...

@PedroBarbosa, racon `1.2.0` has a wrapper script to enable easier correction of large files (you can split target sequences to decrease memory consumption). Also, all racon versions beyond `1.0.0` should...

@pauline-ng, could you please advise?

Hello, I am a bit out of the loop regarding CUDA related stuff, but you can try by commenting/deleting this part https://github.com/mkorpar/swsharp/blob/master/swsharp/Makefile#L28-L46 from vendor/swsharp. Sorry for my late reply. Best...