Robert Vaser
Robert Vaser
By log I meant that you run ra again with your data and paste here everything it outputs until the error occurs again :)
Please run `awk 'NR==508206' RS='>' zander_pooled.subreads.renamed.fasta > read_of_interest.fasta` and send me the file via email.
Please run `grep "m54229_180630_022602" zander_pooled.subreads.renamed.fasta` and make sure there is only one match. The read length that my parser obtains matches to the one in file (it even has the...
That is the problem. I only take the read name up to the first white space to "save" memory, nonetheless I think it is expected that this part of the...
Headers are discarded immediately and replaced with ids. I hope that this fixes it as well :D
Nope, it will only trigger if the same error occurs.
Hi Julien, that depends on how repetitive is your genome. Depending on the size of your data and if you don't have anything plant related, I would say under a...
That will be a bit tight because overhead for Illumina data equals 0.5 times the size of the FASTQ file. You might want to downsample it a bit. How much...
Racon, as it loads all reads into memory. The problem will be the Illumina polishing step. You can try running ra without Illumina data and try to polish the assembly...