Robert Vaser
Robert Vaser
Looks fine. Can you try `git clone` and compiling manually? I do not know what could be the problem at the moment.
The conda version worked for you with different input data?
Run the following: ``` bash git clone --recursive https://github.com/isovic/racon cd racon mkdir build cd build cmake -DCMAKE_BUILD_TYPE=Release -Dracon_build_tests=ON .. make ``` You will get the executables in `racon/build/bin`. Try running...
Ugh, which OS do you have?
No problem:) Try to follow this http://jotmynotes.blogspot.com/2016/10/updating-cmake-from-2811-to-362-or.html.
Well I am not sure what is the actual problem with the conda executable. Could you try not removing the old cmake and run the installation lines without sudo? I...
```bash wget https://cmake.org/files/v3.6/cmake-3.6.2.tar.gz tar -zxvf cmake-3.6.2.tar.gz cd cmake-3.6.2 sudo ./bootstrap --prefix=/usr/local sudo make sudo make install ```
Try without sudo, do not edit bash_profile, after installation try to run the new cmake directly.
Try running `./cmake -h` from the directory (if you leave out the dot it will run the one in `/usr/bin` or wherever it is).
Can you print the contents of the cmake directory in which you are currently? I am not sure if you can select different versions from bioconda.