Robert Vaser
Robert Vaser
Haha, no problem! :)
Hello, which version of Racon and which type of data are you using for polishing? Best regards, Robert
This is odd because the infinite loop bug caused by a large amount of reads mapped to a window has been fixed in version 1.3.1 and your description indicates that...
What is the last git commit you have (run `git log`)?
Yeah, that explains it. Recompile with the new commits and run polishing again. It should work now :)
Yes, just the racon part though.
That is really odd. It crashes during overlap parsing due to memory shortage?
You allocated 450 GB of RAM the last time as well? The commits you have pulled fixed only the last step in racon, i.e. where POA graphs are built and...
What are the file sizes you gave racon as input?
That should fit into 450GB. Were there any other processes run in parallel? You can also try mapping reads to the backbone without the alignment (run minimap2 without `-a`) to...