Robert Vaser
Robert Vaser
I have locally done the following: ``` wget https://cmake.org/files/v3.6/cmake-3.6.2.tar.gz tar -zxvf cmake-3.6.2.tar.gz cd cmake-3.6.2 ./bootstrap make ``` which creates a `cmake-3.6.2/bin/cmake`. I do not see the bin directory at your...
Hello Aleksandra, unpolished sequences are those that do not have a region covered with at least 3 other reads, which usually means that they are either of poor quality and...
Hi Jeff, I have not tried using corrected/trimmer reads in polishing, usually we use raw reads when it comes to TGS. Could you try both and compare the outcome? Best...
Hello, I am not sure what might cause segmentation fault after polishing is done. How long did racon take in the first iteration? Could you maybe download racon from github,...
Well, that is great! But kinda weird that you got segmentation fault instead of killed if it was a memory issue. Is the number of sequences now as expected?
If you ran the second iteration on top of the 3000 sequences only, try running the wrapper on the first iterstion as well.
Hello, I really do not know what might be causing a bus error. Did you run the script only once? Try running `racon_test` and see if it runs successfully (run...
It should be created in `bin/` alongside `racon` executable. Do not forget to run `make` after running the above `cmake` command.
How did you try to run it? The thing is that running `make install` won't add `racon_test` into `/usr/bin` so you need the full path to run it.
Did the new command finish properly?