Ronan M.T. Fleming

[status_curl, result_curl] = system('curl --version') On Thu, 16 Sept 2021 at 09:25, robert zhang ***@***.***> wrote: > > Is it possible that you may send me the cobra toolbox folder...

Hi Robert, no. You will need to proceed with the installation as per the detailed instructions. Regards, Ronan On Thu, 16 Sept 2021 at 11:49, robert zhang ***@***.***> wrote: >...

Hi, update to the master version of the cobra toolbox, make sure git and curl are installed, then try again. Regards, Ronan On Tue, 5 Oct 2021 at 10:35, robert...

Hi Marco, put a breakpoint at L118 [optPercentage, osenseStr, rxnNameList, printLevel, allowLoops, method, ... advind, threads, heuristics, useMtFVA] = deal(funParams{:}); then reply with the output of running funParams at the...

Hi Marco, there are 11 parameters there but there should only be 10. What is your call to fluxVariability.m ? What are the options you specify? Regards, Ronan On Mon,...

Hi Marco, I think this has been fixed. Run updateCobraToolbox then run testFVA to see. Regards, Ronan On Mon, 9 Nov 2020 at 18:05, Marco Antoniotti wrote: > Hi >...

Hi Marco, if you look into the code I think you will see that it should only update git bash, not reinstall it. https://github.com/opencobra/cobratoolbox/blob/457d6a5feab5dabb1b5a838e2e1412b3f0d41060/src/base/install/updateCobraToolbox.m#L20 Regards, Ronan On Tue, 10 Nov...

Already incorporated via separate approach

That seems sensible, however I rarely use dynamicFBA so perhaps others could comment.

Hi, I think rxn.mat is a set of reactions. It is assumed that it is in the current folder or a folder in the current path. Perhaps the code could...