Ronan M.T. Fleming
Ronan M.T. Fleming
https://opencobra.github.io/cobratoolbox/stable/tutorials/tutorialRelaxedFBABounds.html On Wed, 10 Jan 2024 at 11:25, majunyeong ***@***.***> wrote: > I am trying to predict interactions between microbes using the > simulatePairwiseInteractions function with my models created through...
Hi Bastian, is exist('solveCobraLP') == 2 on your machine? It may not be finding an x0 in the polytope due to numerical issues. Are any of your bounds very close...
How about this? if exist('osenseStr', 'var') % Process arguments and set up problem if isempty(osenseStr) osenseStr = 'min'; else if strcmp(model.osenseStr,'max') warning('minimizeModelFlux: model.osenseStr is max, setting to min') model.osenseStr='min'; end...
Fork, fix, PR. On Mon, 5 Jun 2023 at 11:33, maziya ***@***.***> wrote: > defaultSboTerm is not defined in line 496 of writeSBML function. It should > be set as...
model.rxns should not have any duplicates. It seems like a problem with your model. How many model.rxn{i} are rxn00001 ? On Sun, 30 Oct 2022 at 08:39, nystati ***@***.***> wrote:...
IBM have decided not to release a MATLAB interface to the new version 20.1 of CPLEX. The previous version of CPLEX (12.10) can still be downloaded and used, apparently for...
Do you mean omix? https://www.omix-visualization.com On Wed, 28 Dec 2022 at 12:07, Laminsecin ***@***.***> wrote: > *Hi > I am using a genome-scale model and it's format is ".omex". Does...
This is related to the COBRA.binary issue which we hope to fix today. On Sun, 18 Feb 2024 at 14:06, 2132030 ***@***.***> wrote: > model=readCbModel('e_coli_core.xml') > Unrecognized function or variable...
The mlx files are here: https://github.com/opencobra/COBRA.tutorials We are looking for someone to renew an automated pipeline to generate web documentation of for cobra toolbox, tutorials etc https://opencobra.github.io/cobratoolbox Knowledge of Linux,...
what script specifically? On Fri, 9 Dec 2022 at 12:02, Haris Zafeiropoulos ***@***.***> wrote: > Hi there, > > I am trying to figure out the Pareto optimality script of...