Ronan M.T. Fleming

Hi Haris, yes, it looks like it should be model = changeObjective(model, rxn1); Please submit a PR with the fix. Regards, Ronan On Fri, 9 Dec 2022 at 18:49, Haris...

What solver are you using? Try replacing that line with: if ~isfield(solution,'dual') || isempty(solution.dual) primalOnlyFlag=1; end On Tue, 4 Oct 2022 at 14:43, blai ***@***.***> wrote: > I changed to...

Hi Moritz, yes, but then you are into a circular argument. If heuristics is sufficient to detect all the stoichiometrically inconsistent reactions then there is no need to use a...

Hi Moritz, the number of external reactions should equal the number of stoichiometrically inconsistent reactions, but accurately detecting external reactions cannot be done heuristically. Please see the paper for more...

Hi Haris, initCobraToolbox again then it should be there as an .xlxs_tmp file now. Regards, Ronan On Wed, 6 Oct 2021 at 08:10, hariszaf ***@***.***> wrote: > Hi! > >...

Try running initCobraToolbox in matlab then see if it is working. On Thu, 7 Oct 2021 at 01:38, hariszaf ***@***.***> wrote: > I tried to clone the cobratoolbox repo *from...

I think I see this issue also, using the 1.2.1 binary. In this example, it seems to not progress beyond reading. Is it fixed in the new binary? rfleming@hex1:~/work/sbgCloud/code/fork-cobratoolbox/binary/all$ java...

Examples sent.

Thanks John, this pom.xml PR you proposed https://github.com/asad/ReactionDecoder/pull/28/files worked once I had maven compiling with java11.

Hi Aaron, can you create a script to test that all mlx tutorials are there in pdf and html? Regards, Ronan On Thu, 1 Aug 2024 at 16:29, Josh Loecker...